MalteDLuecken

Is it just this? `dmat_cond = pat.dmatrix("condition", adata.obs, return_type='dataframe')` `dmat_samp = pat.dmatrix("sample-1", adata.obs, return_type='dataframe')` `dmat_chip = pat.dmatrix("chip-1", adata.obs, return_type='dataframe')` `dmat = dmat_cond.join(dmat_samp).join(dmat_chip)`

I have a pandas dataframe with gene names, fold changes, and adjusted p-values. That's all you need for a volcano plot really... A nice specification would be the ability to...

Hi @eleozzr, That is great news! If you have it online by tomorrow, we will be able to add it to the benchmark on time :). I am looking forward...

hi @eleozzr, Thanks for the updates. However, I see that the `scanpy` version is still capped to 1.4.4 in version 2.0.3, and it seems this is removed in version 2.1.1...

Also, what is the limit to python 3.7 compatability?

Are you still planning to fix the install requirements in: https://github.com/eleozzr/desc/blob/9acb04702227d684d7e81a338320c59f7a423459/setup.py#L21-L23 Then I could just install from `pip` directly rather than making a git fork and installing via that.

I hadn't tried to install via `pip` yet, as the `setup.py` with the 2.0.3 tag still showed these dependencies. I will give it a go and report back.

Install for 2.0.3 worked, thanks :). Is there a reason you are limited to keras 2.1? Just a question... I can work with that as well ;).

Hi @eleozzr, I have another question about using DESC. I can't see where you pass batch information to the algorithm so that it can perform data integration. Do you explicitly...

Thanks for the example! The parametrization is slightly different to your example notebook. I will use something closer to this if you think this is a better default parametrization for...