LucileSol

abinitio pipeline not copying proper folder into /projects/references/augustus/config/species/

3

I am running the abinitio pipeline with : params.yml : ``` subworkflow: 'abinitio_training' genome: 'genome.fa' maker_evidence_gff: 'maker_evidence.gff' species_label: 'Lin_leo' codon_table: 1 aed_value: - 0.05 locus_distance: - 1500 outdir: 'results_leo' maker_species_publishdir...

The annotation_preprocessing new pipeline does not filter out the contigs less than 1000 nucleotides

7

The annotation_preprocessing new pipeline does not filter out the contigs less than 1000 nucleotides The old pipeline was doing it so we need now to do it manually if there...

The bioconda env for interproscan is not working in the functional_annotation subworkflow. To use interproscan, one needs to install the tool and database locally and add a similar line to...