LucasMcNU

hi, I'm having the same issue with this function. I'm using .cools.

this is the error I'm receiving: ` INFO:numexpr.utils:Note: NumExpr detected 52 cores but "NUMEXPR_MAX_THREADS" not set, so enforcing safe limit of 8. INFO:numexpr.utils:NumExpr defaulting to 8 threads. INFO:hicexplorer.hicCorrelate:loading hic matrix...

I updated to the most recent version and now have the following issue: Traceback (most recent call last): File "/home/lmc0633/.conda/envs/hicexplorer/bin/hicCorrelate", line 7, in main() File "/home/lmc0633/.conda/envs/hicexplorer/lib/python3.10/site-packages/hicexplorer/hicCorrelate.py", line 394, in main...

also run into this issue. using a BED format with V1= chr, V2 = pos1, V3 = pos2. what format should the bed files be in for loops?

any update on this issue? I'm using a loops list generated by Juicer

I would check the number of open files limit for your RStudio Server instance. I ran into an issue where the RStudio Server I was using had a very low...

yes, after I call gc() there is a decrease in the memory footprint. I am throwing quite a bit of RAM on the HPC towards this issue. To open and...

Hi, I wanted to follow up on this - I'm trying to load micro-C data using GENOVA. The data is large (~25-35 GB for .hic file). I'm using an HPC...

Thank you! Where can i find usage guidelines for `load_contacts_subset()`?

It looks like support for juicer .hic files hasn't been added yet?