Lucas F Maciel

Create-taxdump not generating subspecies

3

Hi, I'm trying to use taxonkit create-taxdump but I have two questions: 1) I'm using the following command but all my "accession" names are being assigned as "no rank "...

Updating genomes taxonomy and adding other viruses and fungi genomes

3

Hi, I'm very much interested in using the HumGut database, but I have a few questions about the taxonomy files. 1) I wanted to include the Kraken DB for viruses...

Batch effect seen on Heatmap

5

Hi, First of all, thank you for the very nice method. I have used harmony in two different datasets in combination with SCT and, in both datasets, I have seen...

Hi, I recently found your package which will help make my scripts shorter, but I realized that the silhouette values obtained by you were different from the ones I got....

Error in specific samples

12

Hi, I'm using AMON in my metagenomic data. I have 79 MAGs, and in 70 I was able to run it without problems. But for 9 of them I get...