Lucas F Maciel

@shenwei356 thank you for your reply. I'll try your instructions and check the KMCP as well. Best,Lucas

Tried v 0.5.0 but the script is not finding the db ``` enrichm data [2021-05-26 17:06:18 PM] INFO: Command: ~/miniconda3/envs/enrichm_5/bin/enrichm data [2021-05-26 17:06:18 PM] INFO: Running the data pipeline Traceback...

@jsgounot the version 0.5.0 came with Python 3.6.13 in the conda env. I manually modified the script data.py as indicated by #103 but I'm worried that something else might be...

Thanks for your fast reply. I'll work on that ;) When you say shortly, do you have any estimation? Just so I can have an idea. Thanks again.

Hi @pati-ni Here is a bit more of the code after running harmony ``` dimensions

From what I understand FindClusters performs graph-based clustering on the neighbor graph that is constructed with the FindNeighbors function (which I used the harmony reduction). There is no reduction argument...

Hi @njbernstein I'm using scanpy version 1.10.2 and when I tried to run hashsholo but it's not working and I'm not sure why  Any suggestions? Thank you Edit: htos...