spyglass

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After issues with #1030, the team elected to revoke table creation privileges for the `dj_user` role. - [ ] Docs should be updated to reflect the need for admin to...

CBroz1

Part table not caught by `delete_downstream_parts`

3

im trying to perform this delete: ```python del_key = {"nwb_file_name": 'RS1020240627_.nwb'} sgs.SortGroup.delete(del_key) ``` and i get this error. any help is appreciated. Error stack ```python [17:09:06][INFO] Spyglass: Building part-parent cache...

MichaelCoulter

Table Metadata Lock by long populate calls

3

**Describe the bug** - `User 1` executes a long-running populate call (e.g. spikesorting on long interval with limited compute resource) - When populate begins it starts a transaction with this...

samuelbray32

Moseq Pipeline

1

# Description Draft PR for implementation of Moseq pipeline # Checklist: - [ ] This PR should be accompanied by a release: (yes/no/unsure) - [ ] If release, I have...

samuelbray32

`SpikeSortingOutput.get_spike_indicator` refers to an undefined `fetch_spike_data` here: https://github.com/LorenFrankLab/spyglass/blob/master/src/spyglass/spikesorting/spikesorting_merge.py#L212

CBroz1

Sparse Waveforms from spikeinterface

1

**Describe the bug** `spikeinterface.extract_waveforms` has an argument `sparse`. If this is `True` the waveform extractor will only return the waveforms on a subset of channels that it deems important on...

samuelbray32

Draft of replication tool. TODOs: - [ ] Traverse aliases - [ ] Clean up interface Current usage ```python from spyglass.common.common_session import Session from spyglass.linearization.merge import LinearizedPositionOutput as LO from...

CBroz1

Periph table fallback on TableChain for experimenter summary

4

# Description Thanks, @MichaelCoulter for submitting #1031 Previously, the `SpyglassMixin` delete process inherited banning of peripheral tables behavior, which is useful in the case of long-distance restrictions, and failed to...

CBroz1

merged_sorting_extractor not found

4

In the v0 spikesorting pipeline, the call Waveforms().load_waveforms(key) appears to no longer work. ```python --------------------------------------------------------------------------- ModuleNotFoundError Traceback (most recent call last) Cell In[6], line 1 ----> 1 BrainRegionUnits().populate() File ~/mambaforge/envs/spyglass/lib/python3.9/site-packages/datajoint/autopopulate.py:241,...

jguides

At some point, I put together the attached object-oriented revision to the decoder class/dict conversion funcs. I thought I inadvertently overwrote it, but I found a copy. Attaching here for...

CBroz1