Guo3
With 101bp length illumina sequences, Recorded in Paper's Supplementary Table1, the Peak memory footprint is 3.24 GB, both unpaired and paired. But in practical test using v2.4.2, the Peak memory...
程博士好，读了您的文章FMtree，很有收获. 我理解，当一个pattern有多个Occ时，FMtree将排位邻近的Occ一起做LF跳步，可以提高访问bwt串的数据局部性，即cache更有效，减少访存时间. 当人基因组中，取长30的模式时，绝大多数模式都只有1处Occ，这样的长模式，FMtree应该就起不到加速作用了. 看到文章中结果部分，FMtree仍比未优化的FM-index快了8倍，不太理解是什么原因？或者是我理解错了，FMtree是对多个（上千）模式的Occ一起处理？这样可以避免单个长模式Occ为1的情况.
Thank for the excellent tool bcftools. I have a problem and want to ask you for advice. I have a sam file as follows, containing the alignment info of a...