Leon Hafner

- [x] I have checked that this issue has not already been reported. - [x] I have confirmed this bug exists on the latest version of scanpy. - [ ]...

Using kBET with AnnData object

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Hi together, I would like to use the R version of kBET on an AnnData object (or rather the neighborhood graph stored in this anndata object) for the comparison of...

TACCO for ARM-based systems

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Hi, thanks for the great tool. I wanted to asked if there are any plans to release a version of TACCO that works with the ARM architecture (for linux and...

Error in vignette execution

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When executing this code of the vignette, I run into an error during the model fitting. SessionInfo() R version 4.4.2 (2024-10-31) Platform: x86_64-conda-linux-gnu Running under: Ubuntu 22.04.3 LTS Matrix products:...

New module: SoupX ambient RNA removal

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## PR checklist - [x] If you've fixed a bug or added code that should be tested, add tests! - [x] If you've added a new tool - have you...

STAR: Add support for no/multiple whitelist files

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This PR adds support for complex barcode configurations possible with `--soloType CB_UMI_Complex` in STAR, where multiple barcode segments can occur at different positions (e.g., `--soloCBposition 0_7_0_13 0_16_0_23`) with separate whitelist...

### Description of feature Apart from changing the description of the pipeline, we could add a section in the documentation listing the possible chemistries this pipeline can work with. While...