Lcornet

Can not find required 'nhmmer'

1

Hello, I would like to install barrnap in a singularity container but I have the following issue : ./barrnap --quiet examples/small.fna [barrnap] ERROR: Can not find required 'nhmmer' in PATH...

Nextpolish unfinished

3

**Question or Expected behavior** I launch next polish to correct a genome with Pacbio data, I got a partial correction but the process never ends. This is the command :...

Plant genomes fails

3

Dear RM team, I tried to identify the repeats of my Cassava genome : RepeatMasker -pa 40 -xsmall -dir /outdir/RM cassava/tme3.fasta The program seems to work perfectly if I look...

Single gene - delete long branch

1

Hello, I am using Treeshrink to delete long branch in a SSU phylogeny. It does exactly what i want except that TreeShrink don't remove the species. I run: run_treeshrink.py -t...

anvi-display-functions, KOfam, sugar

1

Dear anvio teams (on others), I am working with anvi-display-functions, using KOfam as annotation source. I have a list of Kofams which i know to be linked with Carbon source...

I have a fasta file with a maker gene and I would like to extract it from raw illumina reads: The marker is in a fasta file with only one...