focus
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LBEM-CH
High Throughput Electron Microscopy Image Processing Software
Hi all, I'm trying to install focus on our cluster, but I keep erroring out with the following: ```bash cc1: warning: command line option '-std=c++11' is valid for C++/ObjC++ but...
``` [ 12%] Built target 2dx_avrgamphs [ 12%] Linking Fortran executable 2dx_boximage.exe /usr/bin/ld: CMakeFiles/2dx_boximage.dir/2dx_boximage.for.o: in function `MAIN__': 2dx_boximage.for:(.text+0x92): undefined reference to `imopen_' /usr/bin/ld: 2dx_boximage.for:(.text+0xb7): undefined reference to `imopen_' /usr/bin/ld: 2dx_boximage.for:(.text+0xfd):...
Hello, The deb package for 1.0 stable or nightly build 1.1 (https://lbem-focus.epfl.ch/download.php) fail to install with error: chmod: cannot access '/opt/focus': No such file or directory Indeed the directory does...
Dear all. I'm running Focus 1.1.0, source install from Github, and I'm trying to follow the 2DXtal processing pipeline. Everything is running nominally at the level of single image processing...
Hi, I have some problems during particle extraction. In the beginning, I was able to extract particles from several images with the error" No handlers could be found for logger...
Hello, I'm running MacOS Mojave (10.14.3) and I recently downloaded Focus (Version 1.1.0 for MacOS(10_12)). All goes well until I try to run "Init Files and Parameters" under 2DXtal. I...
Hi, I had a problem when I used refine merged map in 3D merge. I got attached errors when I used symmetry P121_b. It worked only with P1, P2, P3,...
The path to CUDA is currently hard-coded to `/usr/local/cuda-5.5/include`: https://github.com/C-CINA/focus/blob/495463215f56d86203f0e2f9e54a7af9b55e9e4c/CMakeLists.txt#L84 This should be made configurable with an environmental variable, e.g. `$CUDA_INCLUDE_DIR`
Hi, When trying to run CTF Correction (Part 1) script on a 2dx dataset recorded in super-resolution mode, it gives the following error: "ERROR, image too large. Increase LMAX. Aborting....
I think it would be convenient to have some sort of color indicator on the side of Image Overview portion of Focus to show if the select image has been...
