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LBEM-CH
High Throughput Electron Microscopy Image Processing Software
gctf
Hi again, Next problem : gCTF run is giving this error `Processing done successfully. Average defocus = 2.722 microns CTF Figure of Merrit: 0.251149 Estimated resolution limit by EPA: 0.000000...
It seems that Focus updates the Project parameters for the various programmes it calls when just a single image is re-processed for testing. I.E. all newly processed images are processed...
I have imported a set of images into FOCUS for electron crystallography processing. When running 'Get Lattice & Tilt' the output generates an error: At line 30 of file /Users/bs-hudson/jenkins/workspace/workspace/focus_nightly_build/label/OSX_10.12/kernel/mrc/source/2dx_emtilt.for...
Especially when you are processing many jobs in parallel, and a huge library that takes minutes to load, and you hit the "close" button by accident #truestory
We noted some issues when comparing MotionCor2 in 4k and 8k inputs. In the Library, the parameters "Drift", "MaxDrift", "Deceleration" are the double in 8k than in 4k and should...
Raphi recently recorded 7000 movies. When one selects a few thousand of them (checking the click box for each image), then FOCUS gets very slow.... When the image are not...
The current scripts and GUI expects that there are no spaces in the file/dir paths. From GUI, warn the users when they provide spaces in the file names. This would...
Installing Focus on Ubuntu 16.04 results in some segmentation fault in building the CCP-EM Fortran backend. I suspect it is a version issue as I don't remember having similar problems...
If polygonal selection is invoked on the large 3808x3808 image, then the saved coordinate file reports a funny size of 4032.08 x 4032.08 (or similar, floating-point and too large in...
focus/apps/bin/focus.* uses currentDir for locating libraries, and libraries are located at "binDir" original: ``` 1 #!/bin/bash 2 currentDir=$PWD 3 binDir=`dirname $0` 4 export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$currentDir/../lib/ 5 export DYLD_LIBRARY_PATH=$DYLD_LIBRARY_PATH:$currentDir/../lib/ 6 ${binDir}/../focus/focus $*...
