Oliver Küchler

> I've noticed this issue when moving my workflow over to a high performance computing cluster. Specifically, I try to run the exact same code that runs locally (on a...

> I tried all the help on various github issues and reddit threads. Including the docker image from https://hub.docker.com/r/francois4/leafcutter/. This docker image would not load when using the argument `library(leafcutter)`...

For me it worked with this Conda-environment: ``` name: test_strandedness_env channels: - bioconda - default - conda-forge dependencies: - python=3.6 - kallisto=0.44.0 - rseqc - pip: - how-are-we-stranded-here==1.0.1 - pandas...

I encountered the same error and just want to share my conda virtual environment file, which made the tool work for me: ``` name: test_strandedness_env channels: - bioconda - conda-forge...

> In the mean time I'm curious to know if you ran the below whether you get similar results to IGV or Slinker (just feed in the SAM files, i.e....