Oliver Küchler
Oliver Küchler
#### Description Hey guys, first a huge thx for your work. The cytoscape project is truly awesome! However, I've stumbled above this problem and couldn't find any posts about it...
Firstly huge thx for your work and for keeping it updated!!!
**Describe the bug** I just downloaded an update of Beekeeper Studio (Version 3.0.7). But now I encounter a bug, where I cannot anymore manipulate my old saved queries and safe...
### Description The code example for the question "**How does Snakemake interpret relative paths?**" included a typo: It used `workflow.get_source(...)` instead of `workflow.source_path(...)`. **Thus**: Changed `workflow.get_source(...)` to `workflow.source_path(...)`.
**Disclaimer** I've already described this case also on StackOverflow [here](https://stackoverflow.com/questions/73547671/snakemake-solving-dependencies-between-modules). However, since I believe it's a real bug, I thought it wouldn't hurt to also post it here. **Snakemake version**...
**Snakemake version** The described bug is independent of the used Snakemake version. **Describe the bug** I've already reported the bug here: https://github.com/alexdobin/STAR/issues/2030 But basically the with the wrapper installed STAR...
Hello guys, I stumbled over an unexpected behaviour for the wrapper [BWA MEM](https://snakemake-wrappers.readthedocs.io/en/stable/wrappers/bwa/mem.html) - `v1.17.3/bio/bwa/mem`: **Snakemake version** 7.12.1 **Describe the bug** Including the command line argument `-O` with any INT...
Hey guys, firstly huge thx for your work! It's really cool and fun to use! However, I stumbled over a case, where the inclusion of an additional confounder column in...
Hi, thx again for your great work with Slinker! ^^ I've been playing around with it, and since I have some use-cases, I tried to compare Slinker's output with the...
Just as a small bug report: When I execute a headless run (e.g. via ssh-protocol), then the last stage `Stage visualise (all)` never finishes.