Koeng101
Koeng101
Close, but not quite! They pull from http://www.kazusa.or.jp/codon/ , which is woefully out of date (last updated 2007), and sometimes, just plain wrong. The files are also not static but...
No don't think so. I think I actually just solved the problem that was preventing me from using the raw genbank (which forced me to use gff). Maybe we should...
The confusion comes in because there aren't any "optimization tables", there are only codon tables, they just each have a slightly different structure.
Yea so the biggest one is something around this - https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3115271/ You *can* express two different codon tables from a single genbank file. Though probably for historical reasons, the translation...
I think it *might* be fixed in my newer version of the genbank parser #221
@okdistribute any update with that new update? I have similar data with lots of files I'd like to share, so have waited for this issue to get closed for a...
Where would this exactly fit in in the documentation system? https://documentation.divio.com Like, are we thinking how-to guides, or tutorials of simple projects?
Check out sqlc.dev I’ve been using it lately and it’s fantastic. It takes your SQL schema and generates type-safe Go code. It non-trivially reduced the amount of bugs I get,...
Depends on #313, so deprioritizing for now and upping priority there
> Do we want to create a `Sequence` struct to be reused across packages that holds whether or not the sequence is circular? Probably. We have something like that in...