KG-Microbe -- Knowledge graph construction for microbial traits and beyond

Conference paper

Semantic Scholar

Documentation

KG-Microbe @KG-Hub

Monthly builds

Setup

• Create a vrtual environment of your choice.
• Install poetry using pip install poetry
• poetry install
• git clone https://github.com/Knowledge-Graph-Hub/kg-microbe.git
• cd kg-microbe

Download resources needed

• poetry run kg download : This will download the resources needed for this project.

Transform

• poetry run kg transform: This transforms the resources into knowledge graphs (KGs).

Merge

• poetry run kg merge: This merges all transformed graphs above.

Release

Requirements

In order to be able to make KG releases on this repository, you'll need:

• Appropriate permissions to this repository.
• A Github token that has permissions on this repository. This is how you set it in GitHub. Make sure your token has access to this project.
• Save this token locally assigned to the environemnt variable GH_TOKEN

  export GH_TOKEN = XXXX
  

  or add it to your ~/.bash_profile or ~/.bashrc file.

Contributors

Please remember to run poetry run tox before every commit to make sure the code you commit is error-free.

Acknowledgements

This cookiecutter project was developed from the kg-cookiecutter template and will be kept up-to-date using cruft.