Kilian Leon Kleemann
Kilian Leon Kleemann
Hello, I downloaded the mm10 index from Bowtie2 website and ran make_mm10.sh Everything seems to run fine until the end when it just says "failed to build and index" Building...
Tried installing SCP with devtools. I have python 3.10
Hi Everyone, Not sure but I started getting this error after trying to re-install Clusterprofiler. Error: package or namespace load failed for ‘clusterProfiler’ in loadNamespace(j = 3.23.2 is required I...
- [x] Paste your deepTools version (`deeptools --version`) and your python version (`python --version`) below. deeptools 3.5.4 python 3.10.12 - [x] Paste the full deepTools command that produces the issue...
Hi, I'm getting this error message after executing SalmonTE.py quant: one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode! Do you have any...
/Users/kiliankleemann/SalmonTE/salmon/darwin/bin/salmon quant -i /Users/kiliankleemann/SalmonTE/reference/mm -l A -r /var/folders/p1/w5vpt8z97n3f8xvc8kzc87nc0000gn/T/tmpvc3znywe/DE12NGSUKBR137309_1.fastq.gz -o /Volumes/OhneTitel/Anne_BMDM_try_August_2023/SalmonTE_output/DE12NGSUKBR137309_1 -p 4 2>/dev/null (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)
Tried to run talon_initialize_database but got an error: ``` talon_initialize_database --f reference/GRCh38_GENCODE_rmsk_TE_reformatted.gtf \ --g hg38_rmsk_ucsd \ --a hg38 \ --o hg38 chrY bulk update genes... bulk update gene_annotations... Traceback (most...
tried running telescope on single cell data but getting this error: telescope: error: unrecognized arguments: --barcode_tag CB --stranded_mode RF
I#m having trouble to understand the naming convention of samples. Some cell lines have missing replicates (e.g. only 1,5,6) and some replicates have only run1 or run2. Would greatly appreciate...
I tried: aws s3 sync --no-sign-request s3://sg-nex-data/data/sequencing_data_ont/fastq/sample_name . but there is no download happening? Not sure what I#m missing.