Kilian Leon Kleemann
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Kilian Leon Kleemann
Dear Ben, bowtie2 version: 2.4.2 Command: mkdir SAM_files cat sample_list.txt | while read sample; do bowtie2 -p 12 -q --local -x mm10 -1 fastq/trimmed_reads/${sample}.1.trimmed.fastq.gz -2 fastq/trimmed_reads/${sample}.2.trimmed.fastq.gz -S SAM_files/${sample}.unsorted.sam done Everything...
@gireeshkbogu @genecell Same!