HotMAPS_2016

HotMAPS_2016 copied to clipboard

Hi I tried to follow Tutorial (Mapping mutations) at https://github.com/KarchinLab/HotMAPS/wiki/Tutorial-(Mapping-mutations) But I got an error when run make prepMutations ....... mkdir -p mkdir: missing operand Try 'mkdir --help' for more...

shiqili-17

Couldn't follow the tutorial

2

Hi I tried to follow your quickstart at https://github.com/KarchinLab/HotMAPS/wiki/Quick-start I did download 1E96.pdb and 1E96.pdb1 to a local folder, and edited the config file. Then run `make annotateStructures` python scripts/add_path_info.py...

YonkoBigMom

a/b measn

3

1. hotspot region in result : 1e96 HNSC 0:A:116;0:A:159;0:A:18;0:B:102;0:A:29;0:A:15 What does 0 mean? What does A/B stand for? 2. How to know the correspondence between genes and hotspots? Can I...

Chensanyu

404 error when accessing links in the README.md

1

Hello, I am trying to find documentation for HOTMAPS. However, the link in the README of this codebase are all returning 404. Can you please point me to the current...

skanwal

Couldn't follow the Quick-start

1

I tried to follow your quickstart at https://github.com/KarchinLab/HotMAPS/wiki/Quick-start. The file pdb_info.txt.gz（http://karchinlab.org/data/HotMAPS/pdb_info.txt.gz）and mupit_modbase.sql.gz (http://karchinlab.org/data/HotMAPS/mupit_modbase.sql.gz) need to be downloaded. I can't find the two files; the path provided on the wiki is...

xiaoqiwang19