JunmingH
JunmingH
Hi Tobias, Attached is the script. I ran it with around 300 samples. But there is no chance to run it completly. /DCC-0.4.7/DCC/main.py @DCC_InputFiles/samplesheet_BM10 -T 2 -D -N -R /ref/GRCh38_Repeats_simpleRepeats_RepeatMasker.gtf...
Hi Tobias, One of my scripts is successful. It used 400 Gb memory for filter function. But it still stuck at a place. I am not sure which part it...
BTW very appreciate for your help!
Do you mean -A /ref/Homo_sapiens.GRCh38.dna.primary_assembly.fa this file?
Hi Tobias, Is this warning normal?, I got this when doing linear counting 2020-03-24 09:52:35,105 WARNING: circRNA start position ('chr18', '45196357') does not have mapped read counts, treated as 0
Try ucsc annotation file. This one did not have chromosome number. Junming
I met the same issue, Do you have any ideas to solve this?
Thanks For your reply! Is this the solution for first issue or second issue?
@tjakobi Hi Tobias, I am also run SE data without specify the -mt1 and -mt2. But still have the same error message. I try to integrate all the files with...
@tjakobi Hi Tobias, I have a question about combine the results. Since I could not run all files at same time. Therefore, I run it one by one and store...