JunmingH

@tjakobi Yes same error with this remove_empty_lines TypeError: 'NoneType' object is not iterable Command exited with non-zero status 1

@tjakobi Sure python2 ${app_dir}/main.py @samplesheet \ -D -N -R ${gtf_dir}/GRCh38_Repeats_simpleRepeats_RepeatMasker.gtf \ -an ref/GRCh38/annotation/Homo_sapiens.GRCh38.95.gtf \ -F -M -Nr 1 1 -fg -G -A ref/Homo_sapiens.GRCh38.dna.primary_assembly.fa\ -T 2 -O /dcc_all_results/ \ -B @bam_files...

Could you give me an email address? I can send it to you!