Jose Blanca

3d scatter fails to plot with PyQt5 and GL errors

4

**Describe the bug** The 3d viewer does not plot any markers **To Reproduce** Steps to reproduce the behavior such as: 1. Open glue 2. Load csv data 3. Open a...

data available to custom viewer

1

Hi, I'm trying to create a heatmap custom viewer. I want to load a matrix and to plot it using the matplotlib imshow. I've followed the basket shot tutorial, and...

http://www.ruhr-uni-bochum.de/spezzoo/cm/cm_phobos.htm

take a look at btrim

1

http://www.ncbi.nlm.nih.gov/pubmed/21651976?dopt=Abstract

improve EST mapping to genome

2

gmap is doing a poor job, improve it. Take a look at tophat and search for others. If none is found a smith-waterman realignment of the gmap result could be...

Remove old files

1

It would be nice to have the chance to remove the files that won't be needed anymore when an analysis is done. In that way a lot of disk space...

a new annotation tool independent of ngs_backbone. allow to upload the result to a chado database.

Create a report informing about how many sequences have been clean, how many adaptors have been trimmed, etc.

add the possibility of removing contaminants like tRNA, rRNA, E. coli, etc. to backbone and clean_reads.

some for 454 and some for solid