Javan Okendo

[ERROR] FATAL UNHANDLED EXCEPTION: System.Exception: Exception during execution of external process: 217362

3

My Maxquant analysis runs smoothly then it fails at the FDR assignment stage. What could be causing this problem? Loading requirement: compilers/gcc820 python/anaconda-python-3.7 Configuring Testing fasta files Testing raw files...

Analysis stuck for over two days!

1

I only have 12 samples which I started working on two days ago. The program is stuck and I am not if this is normal. Can someone confirm this? SqueezeMeta...

Out of memory error

2

I am running SqueezeMeta on HPC and I am getting the following error: `Dear ilifu slurm user,` `Your job 4361185 (squeezMeta) has changed state:` `Run time 00:26:24, OUT_OF_MEMORY` `Kind regards,`...

Moving from VCF file to `pig60K` data format

3

I have a VCF file and I would like to convert it to `pig60K` example data format. I have four conditions which I was to compare the SNPs using `Manhattan`...

I am getting the below error when I try to run this pipeline on HPC with -profile singularity. Our HPC does not support docker. Could you help in solving this?...

Reading single end reads

4

Hi, I have a single end reads and I would like to use this powerful pipeline to process my samples. Which command can I use to process this type of...

program stopped abnormally and it does not show the error

15

The analysis stopped without showing what the problem could be. Could you have a look at the below and advise: SqueezeMeta v1.5.1, Jan 2022 - (c) J. Tamames, F. Puente-Sánchez...

jar file not found

6

Dear Sir/Madam, When trying to download the MPA, I get the following error "Not found", the jar file is not available from https://github.com/compomics/meta-proteome-analyzer/releases/download/v1.9.0/mpa-portable-1.9.0.zip can you please advise @adder @nielshulstaert @iain8...

Using vg to analyze transcriptomic data from a mixed background

4

We have a two sets `[A x B]` and `[C x D]` of F0 animals which were short read sequenced. The F0 ([A x B] and [C x D] )were...

I installed dragmap buy using `conda install -c bioconda dragmap` from `https://anaconda.org/bioconda/dragmap`. What I call `dragen-os` I get `-bash: dragon-os: command not found`. What could be the problem because the...