Javan Okendo

icon indicating a website link http://www.chemsysbio.uct.ac.za/ icon indicating an email [email protected]

icon company National Human Genome Research Institute icon location Bethesda, Maryland, USA icon location Bioinformatics scientists

Results 23 comments of Javan Okendo

Using vg to analyze transcriptomic data from a mixed background

I want to use RNA-seq data from the `F2 [ABCD]` generation. From my reading, the `vg rna` needs the transcriptomic and not genomic data. I will give your suggestion a...

Program stuck at [IndexRegistry]: Chunking VCF(s) for days

Hi, My genome assembly was highly fragmented. I only extracted chromosomal scale contigs and it now running. On Thu, Apr 25, 2024 at 8:51 PM Jordan Eizenga ***@***.***> wrote: >...

It is possible to make "known indels" and "dbsnp" databases optional in this pipeline as was done in Sarek?

Not sure if that can work but I will give it a try