Javan Okendo

Hi @blahoink I am processing 200 raw files and I don't know how to go about this problem

@fpusan Thanks for this. I installed this software today and I am assuming that it's the latest version. I will try your suggestions and let you know how it goes

@YinLiLin I have checked online but I cannot see appropriate tool to convert vcf to csv. Could you share the tool you normally use?

> return cls._id_to_erx(identifier) This also worked for me.

> cc @lucacozzuto I am trying to analyze single end RNAseq data and the pipeline is designed to take up paired end reads. Could show me how I can single...

@laurahspencer this tool is a great tool but it's yet to be configured to accept single end read, @pditommaso can help in sorting this

[syslog.zip](https://github.com/jtamames/SqueezeMeta/files/9357714/syslog.zip) What could have happened here: Input and filter stats: Input sequences: 437,601 Input bases: 587,772,414 Input mean length: 1343.17 Good sequences: 437,601 (100.00%) Good bases: 587,772,414 Good mean length:...

When I run `test_install.pl` I get the following: ``` module add anaconda3 conda activate SqueezeMeta Checking the OS linux OK Checking that tree is installed tree --help OK Checking that...

@jtamames thanks for pointing this. I also tried to unzip `nr.gz` but it appears to be corrupted

`Creating sqlite databases` takes over 100 hrs. Is it normal or it is me getting something wrong?