João Rodrigues

Hey Peter, I'm on it, almost done with it after this last weekend.

I disagree with the warning because the original problem still remains. Changing the id for the residue to clash with another one is not a good solution because it breaks...

Hi @jadolfbr, happy to discuss it, but I did my best to provide an explanation last time you commented, provided a workaround, and there was no follow-up. I understand the...

My proposed workaround is to 1) create a new chain, 2) add the renumbered residues there, 3) swap this chain with the old chain in the structure. Quite far from...

Here's the problem with what you want to change. The code, as is, will replace the key in `Entity.child_dict` to point to the new value. Say you have a structure...

And just so you don't think I'm being annoying just for the sake of being annoying: https://github.com/biopython/biopython/pull/4623.

Thanks for catching, reporting, and providing a fix for the issue - home run! Could I trouble you to add a unit test that covers this type of case so...

Solved by #5

Hi @LilySnow @amjjbonvin Back to work, trying to figure this out. Could you provide me with an example PDB file to reproduce this issue? Please paste it as a gist...

This seems to work properly here on my laptop. Did you update the code to the latest version?