Jiangjiangzhang6

Results 32 comments of Jiangjiangzhang6

when i run the command " emapper.py -i hap1_protein.fasfa --output xx1 --override --cpu 10 --decorate_gff xx.gff3"

![image](https://user-images.githubusercontent.com/101324838/193445044-2df62707-9f6e-42b3-bde2-65b67dc3639a.png)

when i run the command " emapper.py -i hap1_protein.fasfa --output xx1 --override --cpu 10 --decorate_gff xx.gff3"

> Hi @Jiangjiangzhang6 , > > When parsing your gff emapper is expecting a tab delimited file with 9 fields, as in https://www.ensembl.org/info/website/upload/gff3.html > > Is it your gff file...

when i run the command " emapper.py -i hap1_protein.fasfa --output xx1 --override --cpu 10 --decorate_gff xx.gff3"

its show 0 and 9 ![image](https://user-images.githubusercontent.com/101324838/193445159-e257be94-89ad-4636-bb80-39bf385a5c42.png)

when i run the command " emapper.py -i hap1_protein.fasfa --output xx1 --override --cpu 10 --decorate_gff xx.gff3"

maybe I know error , its would not allow blank line

when i run the command " emapper.py -i hap1_protein.fasfa --output xx1 --override --cpu 10 --decorate_gff xx.gff3"

thank you for your reply , now submit it to the cluster, thank you

the genome was 25Gb and the use the juicerbox to modified the hic heatmap but its worng

![image](https://github.com/aidenlab/juicer/assets/101324838/4558d4cc-0310-406d-a6da-ca7a15a2ebc4) wheather the genome is to big so our software could not handle with it

the genome was 25Gb and the use the juicerbox to modified the hic heatmap but its worng

![image](https://github.com/aidenlab/juicer/assets/101324838/ee20da46-d8f8-4de9-84c8-bd3c62e3c248) and the assembly file could not load in , any other way to solve this

Not including fragment map and not geneated the final fasta file use the run-asm-pipeline-post-review

> > the genome was ultra large scale about 23G, after I motif the assembly via the juicerbox, and conduct the next step with the command "bash ~/software/3d-dna-master/run-asm-pipeline-post-review.sh -r ../fusion_second2.0.review.assembly...

the Dsuite_fBranch.h:63:84: error: no matching function for call to ‘regex_replace(std::string&, std::regex&, const char [1])’ string treeNoBranchLengths = std::regex_replace(treeString,branchLengths,"");

conda install -c conda-forge gxx did it the error casued by the g++ complier

ask forhelp ： error when run run-asm-pipeline.sh

version: 180922 -r|--rounds flag was triggered, will run 0 round(s) of misjoin correction. ############### Starting iterating scaffolding with editing: ...starting round 0 of scaffolding: :) -p flag was triggered. Running...