3d-dna
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aidenlab
Not including fragment map and not geneated the final fasta file use the run-asm-pipeline-post-review
the genome was ultra large scale about 23G, after I motif the assembly via the juicerbox, and conduct the next step with the command "bash ~/software/3d-dna-master/run-asm-pipeline-post-review.sh -r ../fusion_second2.0.review.assembly ../fusion_second2.fasta ../aligned/merged_nodups.txt"
but there was not any fasta file generated . I check the log file
how could I headle with this bug, thank you
the genome was ultra large scale about 23G, after I motif the assembly via the juicerbox, and conduct the next step with the command "bash ~/software/3d-dna-master/run-asm-pipeline-post-review.sh -r ../fusion_second2.0.review.assembly ../fusion_second2.fasta ../aligned/merged_nodups.txt"
but there was not any fasta file generated . I check the log file
how could I headle with this bug, thank you
hello, friend
I miss the same issue, all the same~
if you have the solution, please show it and generous share the method.
the genome was ultra large scale about 23G, after I motif the assembly via the juicerbox, and conduct the next step with the command "bash ~/software/3d-dna-master/run-asm-pipeline-post-review.sh -r ../fusion_second2.0.review.assembly ../fusion_second2.fasta ../aligned/merged_nodups.txt" but there was not any fasta file generated . I check the log file
how could I headle with this bug, thank you
hello, friend I miss the same issue, all the same~ if you have the solution, please show it and generous share the method.
hello, you should check your input fasta, maybe you can use the seqkit or seqtik the reason maybe the fasta contain the other information that not ATGC ,like X , space ,or others
the genome was ultra large scale about 23G, after I motif the assembly via the juicerbox, and conduct the next step with the command "bash ~/software/3d-dna-master/run-asm-pipeline-post-review.sh -r ../fusion_second2.0.review.assembly ../fusion_second2.fasta ../aligned/merged_nodups.txt" but there was not any fasta file generated . I check the log file
hello, friend I miss the same issue, all the same~ if you have the solution, please show it and generous share the method.
hello, you should check your input fasta, maybe you can use the seqkit or seqtik the reason maybe the fasta contain the other information that not ATGC ,like X , space ,or others
So, did your fasta file with this problem? and after your check and modification, re-run this pipeline successful?