JensFGG

**Describe the bug** After running the arboreto function it is not clearing the memory. using 64 cores with 900 gig memory and after finishing it keeps using 600gig for some...

Pyscenic vs scenic GENIE3[results]

1

With R I had many TF and targets with importance levels above 200 when running the Genie3 step However, I when running almost the same dataset with pyscenic using the...

CTX process gets killed

3

Hi , I have an issue and could not find the solution in the documentation. When I run CTX it kills the process early on, because it thinks the workers...

I ran the complete pySCENIC pipeline and ranked the importance of the regulons with the RSS function per subtype of macrophages (roughly 12 different subtypes). It occurs often, however, that...

netVisual_chord_cell - netVisual_individual - par(mfrow) and title.name do not display

4

**** When using the netVisual_Chord_cell the par(mfrow, c(2,1)) and title.name function do not work. ``` par(mfrow = c(2,1)) netVisual_chord_cell(cellchatF7Ctrl, sources.use = group.new[i], signaling = "GRN", slot.name = "net", show.legend =...

Hello, I have gone through the vignette and I think it is a great tool to help make decisions about parameters. However, I am missing the Leiden based clustering. Is...