Jack Tierney

icon company Ensembl icon location European Bioinformatics Institute icon location Bioinformatician @ EMBL-EBI - Genebuild | Researching the accurate annotation and visualisation of protein coding loci

Results 5 issues of Jack Tierney

New module: calmd

3 comment

#778 lists samtools calmd as needing DSL2 module creation.

Homo sapiens Genome.gtf test-dataset is invalid

The genome.gtf file is not sorted and contains features whose parent feature is absent. Surprisingly, this has not caused issues until now. Issue noticed when writing a module for RiboCode...

RiboCode nf-core module

Hi Developers! I am one of the developers of the [nf-core/riboseq](https://nf-co.re/riboseq/dev) pipeline that we have started work on recently. It is now recognised as 'in-development" by the nf-core community but...

new module: RiboCode

1 comment

new module

RiboCode - add error handling where the cli tool does not

Add lines to modules `ribocode_metaplots` and `ribocode_ribocode` to make the process fail when invalid outputs are created. ## PR checklist - [X] This comment contains a description of changes (with...