Zhongyi (James) Guo

Fail to install; how to solve?

4

nstalling “[email protected]” failed.Hide output… npm ERR! code ENOENT npm ERR! syscall spawn git npm ERR! path git npm ERR! errno ENOENT npm ERR! enoent Error while executing: npm ERR! enoent...

**I followed your instructions for downloading. But I get this error. Do you know how to resolve that?** > BiocManager::install("vitkl/ParetoTI", dependencies = c("Depends", "Imports", "LinkingTo")) 'getOption("repos")' replaces Bioconductor standard repositories,...

Some significant chemical clusters omitted in impact plots

4

I noticed there were fewer significant (p-values smaller than 0.05) clusters displayed in the impact plot than those in the excel file. For example, in my analysis, there are 25...

ChemRICH R package

1

I am currently downloading the R function files from your GitHub repository and running them manually and individually on my local machine. I was wondering if you have developed these...

Need to install 2.0.3 to replicate results based on old scripts.

1

Hi, I am replicating results from some old scripts using 2.0.3. But I can only install 2.0.4 now. Does anyone know how to do that? Appreciate any ideas! Thank you!

LoadH5Seurat warning: "The `slot` argument of `GetAssayData()` is deprecated as of SeuratObject 5.0.0"

3

ℹ Please use the `layer` argument instead. ℹ The deprecated feature was likely used in the SeuratDisk package. Please report the issue at . I got this warning when I...