J. Christopher Ellis

Dendogram

2

Can you create a dendrogram from the dist results? Also, could you recommend parameters for large fungal genome comparison?

Conda Install

9

Hi, Several months ago we discussed a new conda install. Is that still in the works?

Installation

3

Hi, I do not have docker. Will hmmer2go be available as a conda download soon? This would really help improve adoption by a large number of researchers. M

Error when running

2

I am getting an error when I try and run Clark with 1.5Tb of RAM for a binned fragment genomes (relatively small). I did install all the databases including viruses...

ImportTaxomoy.pl: command not found

1

Hi, I ran kraken2 --paired no problem and got the results. However when I try and run ImportTaxonomy.pl I get an error that says "ImportTaxomoy.pl: command not found". kraken2 seemed...

Phylogenetic Tree

3

Hello! In the manuscript you use the dist results to create a neighbor-joining tree. Is there a workflow for that are a tutorial? Thanks in advance!

Tree

1

Is there a tutorial for generating a tree with Mash? Thanks in advance!

Mash Graph Node Representation of Metagenomic data

2

Hi, Is there a workflow for using MASH to generate a graph node representation chart of metagenomic data as seen in the MASH manuscript (Fig 3)? Thanks in advance!

Install Error

1

Hi, I have installed atropos on a number of different machines through the years with out issues. However, recently I have not been able to install atropos. I get the...

Partial v Complete Genes for Metagenomic Analysis

8

Hi, I would like to see the partial genes and the complete genes when performing metagenomic analysis. Is there a way to identify both? Thanks, micromania