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Error when running

Open JChristopherEllis opened this issue 6 years ago • 2 comments

I am getting an error when I try and run Clark with 1.5Tb of RAM for a binned fragment genomes (relatively small). I did install all the databases including viruses and Eukaryotas. What can I do to resolve this issue?

./classify_metagenome.sh -O sample.txt -R output

The program did not find the database files for the provided settings and reference sequences (13755 targets). The program will build them. Starting the creation of the database of targets specific 31-mers from input files... terminate called after throwing an instance of 'std::bad_alloc' what(): std::bad_alloc ./classify_metagenome.sh: line 177: 24333 Aborted (core dumped) $LDIR/exe/CLARK $PARAM

JChristopherEllis avatar Apr 12 '18 19:04 JChristopherEllis

looks like an out-of memory situation to me...

mschilli87 avatar Apr 13 '18 07:04 mschilli87

got the same message ....out of memory...

hmassalha avatar Aug 21 '19 18:08 hmassalha