Quentin Andres

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same here but what to expect they make nice tools and then stop maintaining it. then archive it something...

bioconda install gcc_linux-64=9.4.0 gxx_linux-64=9.4.0 module load zlib cd veritymap && rm -rf build/ && make

Here are the annotation results: 1. Contigs ![contigs_annotations](https://github.com/marcelauliano/MitoHiFi/assets/78720716/1745515a-3fa0-4ae1-87cc-3675c62d213d) 2. Final mtDNA ![final_mitogenome annotation](https://github.com/marcelauliano/MitoHiFi/assets/78720716/11ad5a40-0efc-4fe6-a153-fd07417ebaea) Could suggest some next steps? also do you think I rather use the ONT hifiasm asm as...

Do you think that there could be contamination in the nanopore data? ![image](https://github.com/marcelauliano/MitoHiFi/assets/78720716/d95e0d75-ec6d-485e-8389-23b4d39b69a2)

Ah that explains a lot.. lol is it capped or something?

When I had problems with freebayes, it was because I didnt have the last version which will use python 3 and not python 2. try to update freebayes and use...

your freebayes is too old. snippy too. the newest version had a corrected version of vcffirshheader.