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Compiling issue on VerityMap

Open cappadoc opened this issue 3 years ago • 4 comments

I had a problem when varitymap alignment run was executed. Immediately after run, the following error message was output and the run stopped.

Read mapping started... Compiling mapper... Failed to compile VerityMap! Please try to compile it manually: run "make" in /home/.local/lib/python3.9/site-packages/VerityMap-2.0.0-py3.9.egg/veritymap

I have installed VerityMap locally using the source files including the libraries indicated in the requirements file because my linux environment cannot use the internet. After install, veritymap --help command displayed the available options without errors.

How can I resolve this problem?

cappadoc avatar Dec 23 '22 03:12 cappadoc

Had you solved this problem?

yeeus avatar Nov 30 '23 07:11 yeeus

Hey

I have the same problem and running make does not work.

Skærmbillede 2024-10-10 kl 09 15 05

LauraSkak avatar Oct 10 '24 07:10 LauraSkak

same here but what to expect they make nice tools and then stop maintaining it. then archive it something...

Isoris avatar Nov 05 '24 20:11 Isoris

bioconda install gcc_linux-64=9.4.0 gxx_linux-64=9.4.0

module load zlib

cd veritymap && rm -rf build/ && make

Isoris avatar Nov 05 '24 20:11 Isoris