SMNCopyNumberCaller

SMNCopyNumberCaller copied to clipboard

Hello, I carefully read through your SMN tool source code and I think your tool is fantastic. I can understand most of it, but I feel a bit confused about...

bioPG

A problem occured run smn_caller.py

7

hello!! When I run "smn_caller.py --manifest depth_calling/tests/test_data/NA12885.bam --genome 19 --prefix NA12885 --outDir ./ --threads 2",the error " File "/public/home/donglijie/miniconda3/envs/smncnv/lib/python3.7/codecs.py", line 322, in decode (result, consumed) = self._buffer_decode(data, self.errors, final) UnicodeDecodeError:...

dongdongyaa

cn assign to SMN1/2 is confusing

2

Hi, Thanks for the convenient tools！I have some confusion for the results. It can be seen that the total copy number of smn in the figure is about 1. The...

Soleilcode

Error when drawing

2

Hello, I successfully used smn_caller.py to get the results, I want to use smn_charts.py I drew a picture, but I got this error Here's my code: smn_charts.py -s /home/dell/project/muscle/WGS/SMNcopynumbercaller/SMN_try.json \...

zshu-alt

Low coverage and confidence

2

Amazing little program! A few questions 1. The difference from raw to mapped was 81% from my Nebula results. There was a warning before finishing that stated low coverage, confidence...

freconfarmer

hyj5016

Version argument CLI

1

SMNCopyNumberCaller is in our nextflow pipeline where we have a stub to collect the versions of each software include in the pipeline. It would be nice if `smn_caller.py` had a...

ryanjameskennedy