Ido Bar

Error in esquisser(): mfunc(bs_global_get()) : attempt to apply non-function

3

Hi, A student of mine (a non-gh user) is having issues running `esquisser()`, with the following cryptic error: ``` > library(esquisse) > esquisser() Error in mfunc(bs_global_get()) : attempt to apply...

Update p_load.R

1

Make sure only selected packages are being updated

Properly convert to dataframe and return the df

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Used as.data.frame(x) instead of data.frame(x) to handle conversion of tibbles (and other sort of rectangular data). Then at the end of the function added x to the invisible() command, so...

Conversion to dataframe fails with tibbles

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When using `write.xlsx()` on a tibble at the end of a dplyr-style pipe, a very cryptic error appears: ``` Error in .jcall(cell, "V", "setCellValue", value) : method setCellValue with signature...

MonetDBLite is misspelled in list of packages needed

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Please note that in the list of packages needed for the tutorial, `MonetDBlite` should be written as `MonetDBLite`. Thanks

Based on https://commons.wikimedia.org/wiki/File:Australia_States_Map_-_Colours_with_White_Borders.svg The order of the states should be `c("QLD", "NSW", "VIC", "NT", "WA", "TAS", "SA")` (I wonder if it is possible to use a named vector for the...

I'm trying to get a basic working example, using a single primer pair, with the following command: ``` i=13 search_primer_pair(name=sep_primers$Primer_name[i], clustal_options=c(exec="D:/Bioinformatics/Tools/R_bins/clustal-omega-1.2.2-win64/clustalo.exe"), sep_primers$Primer_seq_fw[i], sep_primers$Primer_seq_rv[i], num_aligns=10, total_primer_specificity_mismatch=3) ``` But I get the...

Uniprot Metazoan database not downloaded due to changes in UniProt REST API

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The `precheck_TransPi.sh` script fails to download the UniProt Metazoa database due to changes to the API. This is what comes back from the download command: ``` $ curl -o uniprot_metazoa_33208.fasta.gz...

When running the Precheck script `bash precheck_TransPi.sh ~/scratch/sandbox/TransPi_test`, the Trinotate preparation process fails with the following message: ``` Can't locate DBI.pm in @INC (you may need to install the DBI...