IanDMedeiros

> @pbuttigieg: To be clear, is your concept of fungal material different from fungal tissue? No, I think that "fungal tissue" gets at the same idea. (I don't see fungal...

These appear to be verbatim definitions from the International Geosphere–Biosphere Programme land cover classification system: https://smap.jpl.nasa.gov/system/internal_resources/details/original/284_042_landcover.pdf

If I understand the gbk file correctly, they are using both `protocluster` and `candidate_cluster`; the issue is that both numbering schemes are at the contig level instead of the genome...

You mean the 1.1, 1.2, 2.1... etc. numbers in the html output? Those are not in printed to any field in the gbk file.

Came across the same error today while trying to set up funannotate to work with both lichen mycobiont and photobiont genomes. The problem seems to be that the plantismash API—if...

Re: your comment @nextgenusfs on compare not being written for hundreds of genomes, I have added --skip_visualizations and --skip_phylogeny options to my local copy of funannotate, both for debugging purposes...

Hi @ernesfranco: I was able to reproduce your error with my own data and I think it is another issue with how antiSMASH v6 output is getting parsed... in this...

Getting the identical error. Running the latest version of DiscoVista on a RHEL hpc cluster and an a MacBook Pro---same issue with both.

This seems to be an issue with IQ-TREE outputting zero-length branches where the length is printed as "" rather than "0".

@ad010902 Did you edit the perl scripts in gmes_linux_64 to use /usr/bin/env perl instead of /usr/bin/perl? That change is probably necessary if you are working in a conda enviornment.