isa-api
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ISA-tools
ISA tools API
at line 81 the test should mock the service or make a test on a url pattern
isajson.validate() has a "config_dir" parameter that defaults to using some JSON configuration files for various technology and measurement types, but if you don't have one of those types, errors are...
When using a characteric of a sample or another material, if the value is a numberal with a unit, ISA TAB will not recast the value as an integer when...
In isatools\isatab\validate\rules\core.py in the "Rule" class in the "execute" method if a rule has an exception it is caught here as "e" and "e" is printed. I'm not sure what...
https://github.com/ISA-tools/isa-api/blob/972f4d81642eca30da5266b400b7cbd222c65848/isatools/convert/json2isatab.py#L52 document the problem and outline guidelines/fix outline
to add to: - [ ] test_isatab.py - [ ] test_isajson.py create tests on: Char[],PV[] and FV[]
Symptoms: Conversion from ISA-JSON to ISA-TAB drops unrecognized assays if measurement type and technology types not found in `/resources/config/json/default` by the converter - [ ] strict requirement on `measurement type.term`...
```Source Name | Characteristics | Sample Name``` and ```Source Name | Characteristics | Term Accession Number | Term Source REF | Sample Name``` - Will be serialised differently in JSON...
If you try to create 2 files of the same type in the same assay in a JSON to Tab conversion only the last file will appear as the name...