isa-api
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ISA-tools
ISA tools API
Dear ISAteam, Hope all is ok on your side. Just want to know if using ISA-JSON or ISA-API implementations help using custom configuration files to test using ISA on ecology...
Rebasing the original branch for this did not go well, so I manually created another one. This PR should replace #510. I was able to get this to pass all...
A few of the PRs I still have open and am working on have all ran into this issue, and I need some input from you guys to resolve it....
to avoid build failure as witnessed: ====================================================================== ERROR: test_get_pubmed_article (utils.test_isatools_utils.TestPubMedIDUtil) ---------------------------------------------------------------------- Traceback (most recent call last): File "/home/runner/work/isa-api/isa-api/tests/utils/test_isatools_utils.py", line 172, in test_get_pubmed_article J = pubmed.get_pubmed_article('25520553') File "/home/runner/work/isa-api/isa-api/isatools/net/pubmed.py", line 23, in...
I went through the code in the "model" folder, the JSON Schemas in "resources/schemas/isa_model_version_1_0_schemas", the JSON Schemas on https://isa-specs.readthedocs.io/en/latest/isajson.html, and the specification on https://isa-specs.readthedocs.io/en/latest/isatab.html to try and find inconsistencies. My...
If a property is "required" it should be an error, no? I also changed the investigation config file so that Study Person Mid Initial and Investigation Person Mid Initial aren't...
When I was looking into what we discussed about #553 I found what @proccaserra said about certain columns only being added if protocol types are known. I think I have...
This PR goes all the way back to the initial meeting we had to discuss adding a way to opt out of the configuration validations. I have implemented that here....