isa-api

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I have been running the tests locally on my machine to try and track down some of problems with my PRs, and I found an issue. Initially, I had a...

ptth222

ISA-JSON validation error for JSON from createSimpleJSON documentation

2

I have installed the isa-api for the first time and tried to create a sample ISA.json file using your documentation (https://isatools.readthedocs.io/en/latest/example-createSimpleISAJSON.html). Then I tried to validate the created file accordingly:...

Hannah-Doerpholz

I'm curious about what we happen if we were to provide the characteristic_data["value"] has a not acceptable data type (list, tuples, set, object, ....). I think it would append an...

proccaserra

- [ ] allow another argument to pass an ontology source object - [ ] raise Error if not - [ ] associated tests

proccaserra

- [ ] relates to the issue noticed during refactoring in issue-511 , see constants.py - [ ] test to explain why _LABELS_ASSAY_NODES and ASSAY_LABELS do not match.

proccaserra

This can be considered an inconsistency, but I decided not to add more to Issue #534. It might be better to keep things smaller and easier to close. The XML...

ptth222

feature request: have a attribute (Characteristics[] or Measurement[]) on Assay Name

3

- request made during the BH2022 - using 'Measurement[]" - pattern could look like this: |Assay Name|Measurement[plant height]|Unit|Measurement[mean leaf area]|Unit|Raw Data File| |--|--|--|--|--|--| |observation1|10|cm|0.03|sqm|null| `Measurement[]` could be used in lieu...

proccaserra

check def test_magetab2json_convert_e_mexp_31 in test_magetab2json.py file

proccaserra

- [ ] create folder under resources/json-context/ - [ ] naming convention used by ISA under resources/json-context/ isa_assay__context.json.ld

proccaserra

proccaserra