Huimin721

RPCA changes raw count

13

Dear Team, I performed a data integration with RPCA algorithm, then extract the raw count with Seurat.object@assays@RNA@count, however, I found the count data is slightly different from the count data...

Hi loomR team! I have a question regarding combining loom files. If I have a Seurat object which is a combination of 2 samples and I have separate files for...

Parameter question

1

Dear team, Thank you for the outstanding work! I have a question regarding the parameter. If I do -s 10, and in the toml file, I do: [Data] min-molecules-per-gene =...

Error: std::bad_alloc when run FindNeighbors

1

Dear team, Thanks so much for developing the outstanding analysis tool! I recently met this error when I run FindNeighbors on 200000 cells data. Computing nearest neighbor graph Computing SNN...

freebayes subprocess terminated error

1

Dear author, Thanks so much for developing the great tool. I recently applied it on a single nuclei data, and encountered some errors I have never met with 10x single...

sparse mixture model clustering result

5

Dear authors, Thank you for developing the outstanding method. I'm trying to plot the sparse mixture model clustering result with the output of our own data. If I want to...