Huimin721

> Hi, > > Not member of dev team but hopefully can be helpful. Can you please provide full code that you are running for the analysis and the code...

> Can you post the code and output of the comparison are you running that states that counts after are different? Hi Sam, Thank you. There are a lot of...

> Can you post the code and output of the comparison are you running that states that counts after are different? Here are some more exploration: > (countdt['ZNF669',] - rawcountdt['ZNF669',])[(countdt['ZNF669',]...

@yuhanH @samuel-marsh Hi everyone, Thanks so much for your exploration. I find the issue is reproducible for other data. I downloaded some raw human brain ST data from: **https://github.com/LieberInstitute/HumanPilot I...

> Hi @Huimin721 > > So the issue you seem to be describing in this last post is not about the raw counts changing RPCA (or any analysis) but the...

Hi Sam, @samuel-marsh Thanks so much. I think we are closer. Yes, I think the individual filtering will make each single Seurat object contains different genes. For example, if object...

> Hi @Huimin721 > > I'll leave that to @yuhanH or another member of the Seurat team in terms of analysis methods behind integration. > > Best, Sam Hi Sam,...

Thanks for the wishlist! Could I ask if it is possible to have a function to identify node orbits and edge orbits? Very eager for this implementation in R!