Karin Hrovatin
Karin Hrovatin
Anyway, the code should be in #776 To me the doc strings there looks fine.
So I made an adata without obs (just X with names in var and obs, from an expression data frame). Then at latter point I wanted to add a whole...
It was right labels in a wrong order. But I would expect an error if totally wrong index and for wrong order not sure if error or reordering (as in...
Is there a chance this close could fix the https://github.com/scverse/anndata/issues/522 issue?
This fails if i want to compute distances on subset of adata only. This is plot of spatial of full data:  I then subset the data to 10th of...
Distances dataframe result also contains the ref cell types, not all of which have distance equal to 0. ``` ref_ct='T cells' distances=exp_dist(adata=adata, groups=ref_ct, cluster_key='cell type', design_matrix_key = "design_matrix", batch_key =...
Is there a way for user to browse var (gene metadata) in CellXGene (e.g. to decide which genes to plot latter on)?
@ivirshup Is the code for all the normalisations (including quantile rescaling) available somewhere?
Maybe like `add_totals`?
@ivirshup Do you have an idea how this could be implemented - I am not even sure about the fig structure of the current dotplot and had problems finding the...