Karin Hrovatin
Karin Hrovatin
I had file open in one process in basked mode. I then decided that I need to make some stuff in another notebook and forgot about having the file open...
Any update on this? yet another of my adatas was deleted this way.
@ivirshup Maybe a temporary solution would be info on how to close a backed file - now I usually just copy info from adata and delete the object immediately, but...
@ivirshup any updates on this? Alternatively, is there a good way to check if anndata file is open somewhere before saving?
Before I have a adata saved on disk of size N Gb. After this the adata file becomes of size 0 Gb and you can no longer do anything with...
Whatever you can do to prevent deletion of files would be very useful for me, especially now when we no longer have snapshots on the server. Because sometimes I forget...
No, I would like to overwrite files, but prevent that they get corrupted if another process has it open. - I often update adatas so I want to change (rewrite)...
I was generating random data for testing - thus the extremely large numbers. never happened during analysis, at least not that I would know of.
Will make for obsm The layers is missing from documentation: https://anndata.readthedocs.io/en/refpaths/anndata.AnnData.to_df.html?highlight=to_df#anndata.AnnData.to_df - not sure how that is generated, maybe an old version?
I think the docstring problem may be that docs are taken from different branch rather than malformed string - when I look at documentation on main it has the layers...