Helena L. Crowell

move `read10xVisium` to `TENxIO`

27

relates to #114 #116 #119 #123

`cbind`: unique/duplicated `colnames`are left asis/made unique; `read10xVisium`: keep barcodes as `colData`; `spatialCoords/<-`: `withDimnames` argument

2

Addressing #100 ... - `cbind` assures unique/duplicated `colnames`are left asis/made unique - in case of duplicates, column names are prefixed with `n_...` where `n` corresponds to the number of the...

relates to #25 #120

Hi there. Thanks in advance for an easy-to-use and well documented tool, and any input you might be able to provide! Was wondering if you had any thoughts on how...

potential restructuring & establishing resources for imaging-based platforms

1

Summarizing thoughts on spatial in R/Bioc that came up here or there during this week's Ascona workshop. More food for thought than specifics, but I'd be keen on putting aside...

`hpaDownload()` is failing unless `version="example/build-in"`

3

Hey! I have tried a lot of things for `downloadList`, but any call of `hpaDownload` is failing, except when using example/build-in datasets. Any ideas? Thanks a lot! **example:** ``` >...

failing to do inference on 2M+ cells

1

Hi Kelly! Not expecting there to still be active devel, but I was wondering whether you could advise on how (if at all possible) get `slingshot` going on 2M+ cells?...

Q: possible to simulate group-specific `cde`?

1

Quick Q. We're using `splatter` to simulate 3 vs. 3 samples from 2 conditions, 3 clusters. However, it seems condition-differences `cde` are introduced "global"ly, i.e., all the same for every...