Hedi65

ARW files not supported

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Hi developer team I bought this app for my android device and I really liked it. However the main reason that I bought was to using it to see my...

Strange behavior of MaSurCa for hybrid assembly

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hi I noticed a strange behavior of MaSurCa for hybrid assembly. I have 10 samples (they are all different for sure), each sequenced using both Illumina and MinION and i...

Dear all i found it very difficult to install MaSurCa on my Ubuntu PC. i have tried several other machines but each time i got very different error. it consistantly...

errors at the begining of hybrid assembly using Masurca

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Hi im trying to make hybrid assembly for Ecoli using MiSeq and Nanopore data in Masurca. currently i m getting two errors marked in Bold bellow. my MinION fastq files...

I'm wondering is it possible to get the stat like start and stop time for sequencing for each file (which contains 4000 reads), belonging to each barcode using PycoQC? thanks...

Dear developer i was wondering how Abricate calculates coverage. we all know that BLAST reports qcovs, is it the same coverage that Abricate reports, or does simply Abricate, divide the...

dear developer i used the factoextra package to run the PCA analyses and visualize the results. this is my command line fviz_pca_ind(pca, label="none", mean.point=F, geom = "point", pointsize = 3,...

Read quality thresholds (Q)

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dear developer after using -vvv in the command line I am getting the below results Read quality thresholds (Q) > 5 66929 100.0% > 7 66049 98.7% > 10 19683...

quality report vs length report

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Dear community I got the full report for read length and quality using the following command lines nanoq -i my_file.fastq -s -Q report_quality.txt nanoq -i my_file.fastq -s -L report_length.txt I...

Hi I am working with metagenomic data from waste water. it is quite common for us to use MiDAS database instead of Kraken2 for instance. i downloaded the **taxonomy file**...