HLHsieh

Option to specify desired read coverage or sequencing depth

2

Hi there, I am wondering whether there is any option for specifying desired read coverage and sequencing depth for simulation. I only saw the option to specify the exact number...

Hi there, I would like to express my appreciation for the great help that your DeepSimulator1.5 has provided in my research. I have a couple of questions that I would...

Hello, I am very impressed with this tool. As far as I understand, I need to train my own model using untreated samples (without any modification on this set of...

Interpretation on <output_prefix>.tsv

1

Hi there, I've received an output file, and according to the readme, the allele column should indicate the allele to which the support read is assigned, based on the genotype...

Alternative version

3

Hello, Thank you for providing this remarkable tool. I'd like to inquire if an alternative version of the tool is available that doesn't necessitate compilation. I'm currently working within the...

Models for R10 flow cell

1

Hi, I'm wondering is there any models that can be used in R10 flow cell simulation.

General questions and Error: inconsistent naming convention

1

Hi Rupesh, I have several questions about the usage: 1. I am wondering whether there are any limitations on its detection length. 2. Could I use strspy to detect the...

Usage Inquiry

3

Hi there, I am interested in this amazing tool. I am wondering whether there are any limitations regarding the length of each tandem repeat. Specifically, I would like to detect...

Stuck at the simulation step

5

Hi there, Thank you for developing this handy tool; I've been using it for a long time. Recently, I wanted to perform a more challenging test on my tool by...

Hi TRGT Development Team, Thank you for developing such an impressive tool. I understand that TRGT is primarily designed for PacBio HiFi data. I am currently working with ONT data,...