CATT
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GuoBioinfoLab
An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.
@aqzas @Huffyphenix ， I am using CATT to extract TCR/BCR information from data from scRNA-seq of immune cells, involving more than 100 datasets. Your article gives a performance comparison of...
Hello, I'm unable to run catt tool. I've set the samtools and bwa paths correctly but the error persists [ Info: 2024-04-19 00:57:59] Program start [ Info: 2024-04-19 00:57:59] Handing...
Hi, I am experiencing a problem when running the CATT Docker image. The test sample runs fine, but other .fq files fail at the Aligning stage with a LoadError. The...
Hi, I found some weird behaviour when running paired-end data. To test some stuff, I created some simulated datasets where I know all the parameters like repertoire size, size of...
I got an error in the first test to run your sample file in CATT. WARNING: both Threads and Distributed export "@spawn"; uses of it in module Main must be...
We are stucked in the first attempt to run the sample file in CATT. Getting this error message repeatedly---------_"ERROR: LoadError: ArgumentError: Distributed not found in path while loading /home/hem/Documents/sra_study/CATT/CATT/catt.jl, in...
Hi, I encountered this error when running CATT for the first time:  However, a quick Google search revealed an easy solution. I only had to change line 587 of...
Hello, I have pulled the Docker Image and try to use the tool to characterize T cell receptor sequences in single-cell RNAseq data. It works fine on human data but...
Hi, congratulations for the project, great job. I have some questions regarding the analysis of Chromium 10X format data. From the documentations: catt --tenX --f1 R1 --f2 R2 -o outputName...
Hi, I was wondering whether you are planning to support different genome builds in the future? I would be specifically interested in hg38/GRCh38. Thanks!
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An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.