LAPIS
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An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2
`npx astro check` complains about a lot of weird things, like ``` src/components/TabsBox/react/TabsBox.tsx:22:18 - error ts(2322): Type '{ children: any[]; className: string; }' is not assignable to type 'HTMLAttributes'. Property...
This is a followup to #379 There are many Mappings in the file LapisController.kt, which make it hard to find a certain endpoint. The idea is, to put each endpoint...
The get requests of the controller have many similar function parameters. The common parameters should be summarized in one class to increase readability and make future changes easier. The swagger...
In #363 it was mentioned, that one could use a parameterized test for the filters of the endpoints, similar to #364 for the csv/tsv endpoints. This should be done also...
Pulling down surveillance from the API includes all sequences no matter the reason. In the case of the US / GISAID this includes traveller surveillance, which if estimating prevalence for...
i got this error message:  https://cov-spectrum.org/explore/World/AllSamples/from%3D2023-04-01%26to%3D2023-07-24/variants?nucMutations=G9652T%2CC20544T&nucMutations1=C20544T&nextcladePangoLineage1=XBB.2.3.2*&aaMutations2=orf1a%3AD48Y&nextcladePangoLineage2=XBB.2.3.2*&aaMutations3=orf1a%3AT2977I&nextcladePangoLineage3=XBB.2.3.2*&aaMutations4=orf1a%3AC7162T&nextcladePangoLineage4=XBB.2.3.2*&analysisMode=CompareEquals&
Hi, I was playing with the public API by going to the following URL: ``` https://lapis.cov-spectrum.org/open/v1/sample/details ``` My browser kept loading for ~2mins but returned this error message: ``` JSON...
At the moment, the only authorization check is through the access keys which are directly managed by LAPIS. Currently, we only have very few keys that were manually added to...
Bumps the minorandpatch group with 7 updates in the /lapis-docs directory: | Package | From | To | | --- | --- | --- | | [@astrojs/react](https://github.com/withastro/astro/tree/HEAD/packages/integrations/react) | `3.6.0` |...