Garrett Ng
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5
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Garrett Ng
This PR handles spec compliant BED12 files, so it won't work as is with BED3-9 and optional fields. Handling the other types of bed files could require creating separate reader...
Partially implemented (some may already be implemented) - [ ] alignments: - [ ] sam.gz: - [ ] tbi - [ ] csi - [ ] bam: bai/csi - [x]...
The fasta implementation was a little tricky since there are multiple relevant readers upstream in noodles: `fasta::Reader`, `fasta::IndexedReader`, and `fasta::fai::Reader`. The core `records_to_ipc` function relies on the `query` method supplied...